Variant report

Variant	rs309271
Chromosome Location	chr2:7202496-7202497
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CMPK2-6	chr2:7202419-7202543	NONHSAT068936
2	lnc-CMPK2-6	chr2:7202001-7202543	NONHSAT068937

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1453125	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1453126	0.85[EUR][1000 genomes]
rs309261	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs309262	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs309265	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs309266	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs309269	0.99[ASN][1000 genomes]
rs309270	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs309272	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs309274	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs309275	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs309277	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs309279	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs309280	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs309281	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs309285	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs309287	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs309288	0.98[ASN][1000 genomes]
rs309289	0.98[ASN][1000 genomes]
rs309290	0.98[ASN][1000 genomes]
rs309291	0.98[ASN][1000 genomes]
rs309292	0.98[ASN][1000 genomes]
rs309294	0.97[ASN][1000 genomes]
rs309296	0.97[ASN][1000 genomes]
rs309297	0.97[ASN][1000 genomes]
rs309301	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6716921	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469394	chr2:7197199-7230988	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv580914	chr2:7197199-7230988	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7189400-7203200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:7189400-7213800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:7194200-7234000	Weak transcription	Pancreas	Pancrea
4	chr2:7194400-7210800	Weak transcription	Lung	lung
5	chr2:7194600-7206400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:7194800-7202800	Weak transcription	Brain Hippocampus Middle	brain
7	chr2:7195000-7217000	Weak transcription	Fetal Muscle Leg	muscle
8	chr2:7199800-7203400	Enhancers	Fetal Stomach	stomach
9	chr2:7200000-7203200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:7200000-7203400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr2:7200000-7203400	Weak transcription	Fetal Thymus	thymus
12	chr2:7200200-7203200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr2:7200400-7203600	Enhancers	Colon Smooth Muscle	Colon
14	chr2:7200400-7203600	Enhancers	Rectal Smooth Muscle	rectum
15	chr2:7200600-7202800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr2:7200600-7203200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr2:7200600-7204000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr2:7200800-7203200	Weak transcription	Primary T cells from cord blood	blood
19	chr2:7201000-7203000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:7201000-7203400	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr2:7201000-7203800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr2:7201000-7203800	Weak transcription	Left Ventricle	heart
23	chr2:7201200-7202800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr2:7201800-7203000	Enhancers	Fetal Kidney	kidney
25	chr2:7202200-7202600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr2:7202200-7202600	Enhancers	Stomach Smooth Muscle	stomach
27	chr2:7202200-7203000	Enhancers	Adipose Nuclei	Adipose
28	chr2:7202200-7203000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr2:7202200-7203400	Enhancers	Aorta	Aorta
30	chr2:7202200-7203400	Enhancers	Ovary	ovary
31	chr2:7202400-7203200	Weak transcription	Dnd41	blood
32	chr2:7202400-7203600	Weak transcription	Psoas Muscle	Psoas

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