Variant report

Variant	rs1455204
Chromosome Location	chr4:15152852-15152853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12646654	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12647022	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12647052	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12651481	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1455202	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16891494	0.81[ASN][1000 genomes]
rs16891498	0.81[ASN][1000 genomes]
rs16891503	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1813151	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28530620	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3899794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57804406	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs930830	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv829868	chr4:14964559-15164706	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15148800-15153000	Enhancers	HepG2	liver
2	chr4:15149200-15153000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr4:15150200-15153000	Enhancers	Brain Substantia Nigra	brain
4	chr4:15150800-15153000	Enhancers	Esophagus	oesophagus
5	chr4:15151000-15153000	Enhancers	HMEC	breast
6	chr4:15151400-15163200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:15152000-15153000	Enhancers	Brain Anterior Caudate	brain
8	chr4:15152000-15155000	Enhancers	K562	blood
9	chr4:15152000-15155400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr4:15152000-15160400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:15152200-15155200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:15152200-15163200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:15152200-15164800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:15152400-15153400	Enhancers	A549	lung
15	chr4:15152400-15155200	Weak transcription	Osteobl	bone
16	chr4:15152400-15163200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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