Variant report

Variant	rs16891494
Chromosome Location	chr4:15154007-15154008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:15147486..15149785-chr4:15152152..15154302,2	MCF-7	breast:
2	chr4:15151866..15154106-chr4:15163665..15166328,2	K562	blood:
3	chr4:15150136..15153304-chr4:15153460..15156952,4	K562	blood:
4	chr4:15091025..15092902-chr4:15153763..15155710,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10008514	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10155295	0.94[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10155296	0.93[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1158430	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12642947	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12644708	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12647022	0.83[ASN][1000 genomes]
rs12647052	0.83[ASN][1000 genomes]
rs12651481	0.83[ASN][1000 genomes]
rs1378336	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1378338	0.93[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1455202	0.82[ASN][1000 genomes]
rs1455204	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs1471011	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1551452	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16891498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891503	0.83[ASN][1000 genomes]
rs1813151	0.82[ASN][1000 genomes]
rs2604555	0.87[ASN][1000 genomes]
rs2702559	0.87[ASN][1000 genomes]
rs28530620	0.80[ASN][1000 genomes]
rs28567921	0.87[ASN][1000 genomes]
rs34387102	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3899794	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs57804406	0.82[ASN][1000 genomes]
rs6449106	0.87[ASN][1000 genomes]
rs6821738	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs732556	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs753399	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs753400	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7662078	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs897347	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs930830	0.85[CHB][hapmap]
rs974177	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs974178	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv829868	chr4:14964559-15164706	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15151400-15163200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:15152000-15155000	Enhancers	K562	blood
3	chr4:15152000-15155400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:15152000-15160400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:15152200-15155200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:15152200-15163200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:15152200-15164800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:15152400-15155200	Weak transcription	Osteobl	bone
9	chr4:15152400-15163200	Weak transcription	Aorta	Aorta
10	chr4:15153000-15161000	Weak transcription	Esophagus	oesophagus
11	chr4:15153400-15160400	Weak transcription	A549	lung

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