Variant report

Variant	rs1813151
Chromosome Location	chr4:15160914-15160915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:15002171..15005049-chr4:15159595..15162318,2	MCF-7	breast:
2	chr4:15159017..15163958-chr4:15165581..15171575,5	MCF-7	breast:
3	chr4:15005341..15007704-chr4:15160215..15162420,2	K562	blood:

Variant related genes	Relation type
ENSG00000247624	Chromatin interaction
ENSG00000137449	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12646654	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12647022	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12647052	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12651481	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1455202	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455204	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16891494	0.82[ASN][1000 genomes]
rs16891498	0.82[ASN][1000 genomes]
rs16891503	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28530620	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3899794	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57804406	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs930830	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv829868	chr4:14964559-15164706	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15151400-15163200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:15152200-15163200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:15152200-15164800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:15152400-15163200	Weak transcription	Aorta	Aorta
5	chr4:15153000-15161000	Weak transcription	Esophagus	oesophagus
6	chr4:15159800-15161400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:15160000-15161200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:15160000-15161200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:15160000-15161200	Enhancers	NHEK	skin
10	chr4:15160000-15161400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr4:15160000-15161400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:15160000-15161400	Enhancers	Brain Hippocampus Middle	brain
13	chr4:15160000-15161800	Enhancers	Brain Cingulate Gyrus	brain
14	chr4:15160200-15161000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:15160200-15161000	Weak transcription	Brain Angular Gyrus	brain
16	chr4:15160200-15161200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:15160200-15161200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr4:15160200-15161200	Enhancers	K562	blood
19	chr4:15160200-15161400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr4:15160200-15161400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr4:15160200-15161600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:15160400-15161000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:15160400-15161400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:15160400-15161400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:15160400-15161600	Enhancers	Brain Substantia Nigra	brain
26	chr4:15160400-15161600	Enhancers	HepG2	liver
27	chr4:15160600-15161200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:15160600-15161400	Enhancers	Brain Anterior Caudate	brain
29	chr4:15160600-15161600	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr4:15160800-15161600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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