Variant report

Variant	rs1456907
Chromosome Location	chr7:50181249-50181250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50179084..50182057-chr7:50188245..50189847,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZPBP-1	chr7:50181136-50181717	ENSG00000228005.1

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10234768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245556	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11974866	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1379174	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1379175	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1379179	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1379180	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1379181	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1456905	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1466292	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1911748	0.83[EUR][1000 genomes]
rs1911749	0.83[EUR][1000 genomes]
rs1911757	0.83[EUR][1000 genomes]
rs1911758	0.83[EUR][1000 genomes]
rs2168591	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168592	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2174929	0.83[EUR][1000 genomes]
rs2202772	0.83[EUR][1000 genomes]
rs2221657	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2366025	0.87[ASN][1000 genomes]
rs2366027	0.83[EUR][1000 genomes]
rs2366028	0.83[EUR][1000 genomes]
rs2366029	0.83[EUR][1000 genomes]
rs3807323	0.85[EUR][1000 genomes]
rs3807324	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3823541	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4244228	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917010	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4917110	0.83[EUR][1000 genomes]
rs4917111	0.83[EUR][1000 genomes]
rs4917112	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6583423	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6583426	0.85[EUR][1000 genomes]
rs6583432	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6956098	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6973828	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs764250	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778784	0.85[ASN][1000 genomes]
rs897695	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs897696	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50173600-50192800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:50178200-50182200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:50180400-50183200	Enhancers	Primary B cells from peripheral blood	blood
4	chr7:50180600-50182000	Weak transcription	Primary B cells from cord blood	blood

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