Variant report

Variant	rs7778784
Chromosome Location	chr7:50135200-50135201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10225094	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10229515	0.85[CHB][hapmap]
rs10234768	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10236637	0.85[CHB][hapmap]
rs10245556	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1032990	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11974866	0.85[ASN][1000 genomes]
rs12674442	1.00[JPT][hapmap]
rs1379174	0.91[ASN][1000 genomes]
rs1379175	0.91[ASN][1000 genomes]
rs1379179	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1379180	0.85[ASN][1000 genomes]
rs1379181	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1396277	0.85[CHB][hapmap]
rs1456905	0.85[ASN][1000 genomes]
rs1456907	0.85[ASN][1000 genomes]
rs1466292	0.85[ASN][1000 genomes]
rs1472886	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1567278	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1905271	0.85[CHB][hapmap]
rs1911751	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1911754	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1911755	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1911756	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2168591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2168592	0.85[ASN][1000 genomes]
rs2202772	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs2221656	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs2221657	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2247628	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2366025	0.93[ASN][1000 genomes]
rs2366028	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3757391	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3807323	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3807324	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3823541	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4244228	0.85[ASN][1000 genomes]
rs4917010	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4917111	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4917112	0.91[ASN][1000 genomes]
rs6583407	0.85[CHB][hapmap];1.00[CHD][hapmap]
rs6583423	0.91[ASN][1000 genomes]
rs6583431	0.84[CHB][hapmap]
rs6583432	0.85[ASN][1000 genomes]
rs6956098	0.91[ASN][1000 genomes]
rs6969018	0.82[CHB][hapmap]
rs6973828	0.85[ASN][1000 genomes]
rs764250	0.85[ASN][1000 genomes]
rs7793883	0.85[CHB][hapmap];0.87[CHD][hapmap]
rs897695	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs897696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv830997	chr7:49970866-50136498	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv830998	chr7:50103183-50156564	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50135200-50135800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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