Variant report

Variant	rs6583431
Chromosome Location	chr7:50165783-50165784
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10225094	0.88[CHB][hapmap]
rs10229515	0.89[CHB][hapmap]
rs10234768	0.89[CHB][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10236637	0.89[CHB][hapmap]
rs10245556	0.89[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1032990	0.89[CHB][hapmap]
rs11974866	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1379174	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1379175	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1379179	0.82[CHB][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1379180	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1379181	0.89[CHB][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1396277	0.89[CHB][hapmap]
rs1456905	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1456907	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1466292	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1472886	0.89[CHB][hapmap]
rs1567278	0.89[CHB][hapmap]
rs1905271	0.89[CHB][hapmap]
rs1911748	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1911749	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1911751	0.89[CHB][hapmap]
rs1911754	0.89[CHB][hapmap]
rs1911756	0.89[CHB][hapmap]
rs1911757	0.86[EUR][1000 genomes]
rs1911758	0.86[EUR][1000 genomes]
rs2168591	0.89[CHB][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2168592	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2174929	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2202772	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2221656	0.86[CHB][hapmap]
rs2221657	0.89[CHB][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2247628	0.89[CHB][hapmap]
rs2366025	0.89[ASN][1000 genomes]
rs2366027	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2366028	0.86[CHB][hapmap];0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2366029	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3757391	0.89[CHB][hapmap]
rs3807323	0.88[CHB][hapmap];0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3807324	0.89[CHB][hapmap];0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3823541	0.89[CHB][hapmap];0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4244228	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4917005	0.84[CHB][hapmap]
rs4917010	0.89[CHB][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4917110	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4917111	0.89[CHB][hapmap];0.86[EUR][1000 genomes]
rs4917112	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6583407	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs6583423	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6583426	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6583432	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6956098	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6969018	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6973828	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs764250	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7778784	0.84[CHB][hapmap];0.87[ASN][1000 genomes]
rs7788998	0.86[CHB][hapmap]
rs7793883	0.89[CHB][hapmap]
rs897695	0.89[CHB][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs897696	0.89[CHB][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3367735	chr7:50163956-50166004	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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