Variant report

Variant	rs6956098
Chromosome Location	chr7:50107268-50107269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10234768	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10245556	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11974866	0.93[ASN][1000 genomes]
rs1379174	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1379175	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1379179	0.93[ASN][1000 genomes]
rs1379180	0.93[ASN][1000 genomes]
rs1379181	0.93[ASN][1000 genomes]
rs1456905	0.93[ASN][1000 genomes]
rs1456907	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1466292	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1508412	0.88[AMR][1000 genomes]
rs1911748	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1911749	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1911750	0.85[AMR][1000 genomes]
rs1911757	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1911758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2168591	0.93[ASN][1000 genomes]
rs2168592	0.93[ASN][1000 genomes]
rs2174929	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2202772	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2221657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2247539	0.86[AMR][1000 genomes]
rs2247628	0.88[AMR][1000 genomes]
rs2366025	0.93[ASN][1000 genomes]
rs2366027	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2366028	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2366029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3807323	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3807324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4019793	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4244228	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4917010	0.93[ASN][1000 genomes]
rs4917110	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4917111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4917112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583407	0.85[ASN][1000 genomes]
rs6583423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583426	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6583432	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6973828	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs764250	0.93[ASN][1000 genomes]
rs7778784	0.91[ASN][1000 genomes]
rs897695	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs897696	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv830997	chr7:49970866-50136498	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv830998	chr7:50103183-50156564	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50105000-50107400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:50106600-50107600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:50106800-50107400	Weak transcription	Fetal Intestine Large	intestine
4	chr7:50106800-50108400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr7:50107000-50108000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr7:50107000-50108000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr7:50107200-50107400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr7:50107200-50107400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr7:50107200-50107800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:50107200-50107800	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr7:50107200-50107800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:50107200-50107800	Active TSS	Stomach Smooth Muscle	stomach
13	chr7:50107200-50108000	Enhancers	Primary T cells from cord blood	blood
14	chr7:50107200-50108000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr7:50107200-50108000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:50107200-50108000	Enhancers	Fetal Kidney	kidney
17	chr7:50107200-50108200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:50107200-50108200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:50107200-50108200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:50107200-50108200	Enhancers	Aorta	Aorta
21	chr7:50107200-50108200	Enhancers	Fetal Stomach	stomach
22	chr7:50107200-50108400	Enhancers	H9 Cell Line	embryonic stem cell
23	chr7:50107200-50108400	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr7:50107200-50108400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr7:50107200-50108400	Enhancers	Fetal Intestine Small	intestine
26	chr7:50107200-50108400	Enhancers	Fetal Thymus	thymus
27	chr7:50107200-50108400	Enhancers	Small Intestine	intestine
28	chr7:50107200-50108600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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