Variant report

Variant	rs1457588
Chromosome Location	chr3:21629318-21629319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10460951	0.82[CHB][hapmap]
rs11919873	0.87[CHB][hapmap]
rs13072036	0.87[CHB][hapmap]
rs1382167	1.00[JPT][hapmap];0.83[MEX][hapmap]
rs1387821	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1457582	0.82[CHB][hapmap]
rs1457586	0.87[CHB][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes]
rs1478067	0.87[CHB][hapmap]
rs1478068	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1871106	0.87[CHB][hapmap]
rs3860580	0.87[CHB][hapmap];0.90[AMR][1000 genomes]
rs3860581	0.87[CHB][hapmap]
rs3965331	0.87[CHB][hapmap]
rs4505724	0.80[AMR][1000 genomes]
rs4626113	0.80[AMR][1000 genomes]
rs4858330	0.83[AMR][1000 genomes]
rs4858334	0.83[AMR][1000 genomes]
rs6763675	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6773387	0.87[CHB][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes]
rs6781314	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6785887	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6785919	0.87[CHB][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes]
rs6794736	1.00[JPT][hapmap]
rs7609618	1.00[ASW][hapmap];0.85[CEU][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7621121	1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs7626779	0.87[CHB][hapmap]
rs7637584	0.87[CHB][hapmap]
rs7650823	0.87[CHB][hapmap]
rs9851357	0.87[CHB][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv589895	chr3:21622387-21638815	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1003451	chr3:21623631-21662267	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv997373	chr3:21624940-21646812	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21603200-21634400	Weak transcription	Left Ventricle	heart
2	chr3:21618400-21643200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:21622800-21634400	Weak transcription	Aorta	Aorta
4	chr3:21625000-21655200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:21625800-21629400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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