Variant report

Variant	rs4505724
Chromosome Location	chr3:21601235-21601236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10460951	0.96[ASN][1000 genomes]
rs11919873	0.93[ASN][1000 genomes]
rs13072036	0.96[ASN][1000 genomes]
rs1387821	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1457582	0.82[ASN][1000 genomes]
rs1457586	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1457588	0.80[AMR][1000 genomes]
rs1478067	0.92[ASN][1000 genomes]
rs1478068	0.82[AMR][1000 genomes]
rs1841915	0.87[ASN][1000 genomes]
rs1871106	0.89[ASN][1000 genomes]
rs1960582	0.96[ASN][1000 genomes]
rs3860580	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3860581	0.83[ASN][1000 genomes]
rs3911494	0.80[ASN][1000 genomes]
rs3965331	0.92[ASN][1000 genomes]
rs4626113	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4858330	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4858331	0.95[ASN][1000 genomes]
rs4858332	0.95[ASN][1000 genomes]
rs4858333	0.95[ASN][1000 genomes]
rs4858334	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66929346	0.93[ASN][1000 genomes]
rs6763675	0.80[AMR][1000 genomes]
rs6773387	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6781314	0.80[AMR][1000 genomes]
rs6785919	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7613175	0.97[ASN][1000 genomes]
rs7616732	0.97[ASN][1000 genomes]
rs7620851	0.95[ASN][1000 genomes]
rs7621121	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7626779	0.92[ASN][1000 genomes]
rs7636804	0.97[ASN][1000 genomes]
rs7637584	0.83[ASN][1000 genomes]
rs7650823	0.96[ASN][1000 genomes]
rs9851357	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3426590	chr3:21593997-21613071	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21574000-21602000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:21585000-21601600	Weak transcription	Fetal Stomach	stomach
3	chr3:21585800-21602000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:21588600-21603200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:21588600-21604600	Weak transcription	Aorta	Aorta
6	chr3:21593000-21606800	Weak transcription	K562	blood
7	chr3:21596400-21606800	Weak transcription	Psoas Muscle	Psoas
8	chr3:21599600-21607000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:21600600-21601600	Weak transcription	Fetal Lung	lung
10	chr3:21600800-21606800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:21600800-21607000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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