Variant report

Variant	rs1462202
Chromosome Location	chr13:55523393-55523394
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11839135	0.95[EUR][1000 genomes]
rs1462189	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1462191	0.86[EUR][1000 genomes]
rs1531450	0.95[EUR][1000 genomes]
rs1531451	0.95[EUR][1000 genomes]
rs1551834	0.91[EUR][1000 genomes]
rs1599559	0.93[EUR][1000 genomes]
rs2126418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2126419	0.87[EUR][1000 genomes]
rs263809	0.84[EUR][1000 genomes]
rs263810	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs263824	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs263825	0.87[EUR][1000 genomes]
rs263831	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs263832	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs263833	0.87[EUR][1000 genomes]
rs2800657	0.87[EUR][1000 genomes]
rs420371	0.87[EUR][1000 genomes]
rs6561803	0.93[EUR][1000 genomes]
rs6561804	0.95[EUR][1000 genomes]
rs6561805	0.95[EUR][1000 genomes]
rs7317573	0.95[EUR][1000 genomes]
rs7320026	0.95[EUR][1000 genomes]
rs73202867	0.91[EUR][1000 genomes]
rs73202894	0.93[EUR][1000 genomes]
rs73204603	0.95[EUR][1000 genomes]
rs73204607	0.95[EUR][1000 genomes]
rs73204610	0.95[EUR][1000 genomes]
rs73204611	0.95[EUR][1000 genomes]
rs73204613	0.96[EUR][1000 genomes]
rs73204615	0.95[EUR][1000 genomes]
rs73204619	0.95[EUR][1000 genomes]
rs73204620	0.95[EUR][1000 genomes]
rs73204623	0.95[EUR][1000 genomes]
rs73204626	0.95[EUR][1000 genomes]
rs73204627	0.95[EUR][1000 genomes]
rs73204628	0.95[EUR][1000 genomes]
rs73204633	0.95[EUR][1000 genomes]
rs73204637	1.00[EUR][1000 genomes]
rs73204639	1.00[EUR][1000 genomes]
rs7321772	0.91[EUR][1000 genomes]
rs7989867	0.93[EUR][1000 genomes]
rs7991935	0.91[CEU][hapmap]
rs8000832	0.89[EUR][1000 genomes]
rs9316755	0.87[EUR][1000 genomes]
rs9527289	0.93[EUR][1000 genomes]
rs9536881	0.91[EUR][1000 genomes]
rs9536893	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9536917	0.83[EUR][1000 genomes]
rs9536926	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9536927	0.87[EUR][1000 genomes]
rs9805429	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv561702	chr13:55086271-55808127	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561704	chr13:55395253-55764633	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv528493	chr13:55438905-55602402	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:55519200-55535600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:55523200-55523600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:55523200-55529000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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