Variant report

Variant	rs263810
Chromosome Location	chr13:55550861-55550862
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11839135	0.95[EUR][1000 genomes]
rs1462189	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1462191	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1462202	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1531450	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1531451	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1551834	0.91[EUR][1000 genomes]
rs1599559	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2126418	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2126419	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs263809	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs263824	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs263825	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs263831	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs263832	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs263833	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2800657	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs420371	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6561803	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6561804	0.95[EUR][1000 genomes]
rs6561805	0.95[EUR][1000 genomes]
rs7317573	0.95[EUR][1000 genomes]
rs7320026	0.95[EUR][1000 genomes]
rs73202867	0.91[EUR][1000 genomes]
rs73202894	0.93[EUR][1000 genomes]
rs73204603	0.95[EUR][1000 genomes]
rs73204607	0.95[EUR][1000 genomes]
rs73204610	0.95[EUR][1000 genomes]
rs73204611	0.95[EUR][1000 genomes]
rs73204613	0.96[EUR][1000 genomes]
rs73204615	0.95[EUR][1000 genomes]
rs73204619	0.95[EUR][1000 genomes]
rs73204620	0.95[EUR][1000 genomes]
rs73204623	0.95[EUR][1000 genomes]
rs73204626	0.95[EUR][1000 genomes]
rs73204627	0.95[EUR][1000 genomes]
rs73204628	0.95[EUR][1000 genomes]
rs73204633	0.95[EUR][1000 genomes]
rs73204637	1.00[EUR][1000 genomes]
rs73204639	1.00[EUR][1000 genomes]
rs7321772	0.91[EUR][1000 genomes]
rs7989867	0.93[EUR][1000 genomes]
rs7991935	0.91[CEU][hapmap]
rs8000832	0.89[EUR][1000 genomes]
rs9316755	0.87[EUR][1000 genomes]
rs9527289	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9536881	0.91[EUR][1000 genomes]
rs9536893	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9536917	0.83[EUR][1000 genomes]
rs9536926	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9536927	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9805429	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv561702	chr13:55086271-55808127	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561704	chr13:55395253-55764633	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv528493	chr13:55438905-55602402	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv916484	chr13:55528644-55979043	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:55550200-55553400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:55550800-55551000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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