Variant report

Variant	rs1462191
Chromosome Location	chr13:55549618-55549619
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11839135	0.84[EUR][1000 genomes]
rs1462189	0.82[EUR][1000 genomes]
rs1462202	0.86[EUR][1000 genomes]
rs1531450	0.84[EUR][1000 genomes]
rs1531451	0.84[EUR][1000 genomes]
rs1551834	0.81[EUR][1000 genomes]
rs1599559	0.82[EUR][1000 genomes]
rs2126418	0.86[EUR][1000 genomes]
rs2126419	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs263809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs263810	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs263824	0.86[EUR][1000 genomes]
rs263825	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs263831	0.86[EUR][1000 genomes]
rs263832	0.86[EUR][1000 genomes]
rs263833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2800657	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs420371	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55774097	0.81[EUR][1000 genomes]
rs6561803	0.82[EUR][1000 genomes]
rs6561804	0.84[EUR][1000 genomes]
rs6561805	0.84[EUR][1000 genomes]
rs7317573	0.84[EUR][1000 genomes]
rs7320026	0.84[EUR][1000 genomes]
rs73202867	0.81[EUR][1000 genomes]
rs73202894	0.82[EUR][1000 genomes]
rs73204603	0.84[EUR][1000 genomes]
rs73204607	0.84[EUR][1000 genomes]
rs73204610	0.84[EUR][1000 genomes]
rs73204611	0.84[EUR][1000 genomes]
rs73204613	0.83[EUR][1000 genomes]
rs73204615	0.84[EUR][1000 genomes]
rs73204619	0.84[EUR][1000 genomes]
rs73204620	0.84[EUR][1000 genomes]
rs73204623	0.84[EUR][1000 genomes]
rs73204626	0.84[EUR][1000 genomes]
rs73204627	0.84[EUR][1000 genomes]
rs73204628	0.81[EUR][1000 genomes]
rs73204633	0.84[EUR][1000 genomes]
rs73204637	0.86[EUR][1000 genomes]
rs73204639	0.86[EUR][1000 genomes]
rs7321772	0.81[EUR][1000 genomes]
rs7989867	0.82[EUR][1000 genomes]
rs9316755	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9527289	0.82[EUR][1000 genomes]
rs9527301	0.81[AFR][1000 genomes]
rs9536881	0.81[EUR][1000 genomes]
rs9536893	0.82[EUR][1000 genomes]
rs9536917	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9536925	0.85[AFR][1000 genomes]
rs9536926	0.86[EUR][1000 genomes]
rs9536927	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9597053	0.81[EUR][1000 genomes]
rs9805429	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv561702	chr13:55086271-55808127	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv561704	chr13:55395253-55764633	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv528493	chr13:55438905-55602402	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv916484	chr13:55528644-55979043	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:55549400-55550200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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