Variant report

Variant	rs1462767
Chromosome Location	chr4:98270800-98270801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10008609	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap]
rs10010910	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1462768	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1462773	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1841791	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1982619	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1993800	0.90[ASN][1000 genomes]
rs34281401	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34336893	0.88[ASN][1000 genomes]
rs7655860	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7661377	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7661470	0.89[ASN][1000 genomes]
rs984242	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9917982	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830014	chr4:98220259-98419635	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1011217	chr4:98254736-98341313	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98269400-98271800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:98269600-98271000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr4:98269600-98271200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:98269600-98271400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:98269600-98271600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr4:98269600-98271600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:98269800-98271400	Enhancers	Brain Germinal Matrix	brain
8	chr4:98269800-98271800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:98270000-98271000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:98270000-98271800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:98270000-98272200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:98270200-98271000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:98270400-98270800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:98270600-98271200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:98270600-98271200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr4:98270600-98271800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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