Variant report

Variant	rs1982619
Chromosome Location	chr4:98201071-98201072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10008609	0.82[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap]
rs10010910	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10452174	0.81[AFR][1000 genomes]
rs1462767	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1462768	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1462773	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1841791	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1993800	0.87[ASN][1000 genomes]
rs34281401	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34336893	0.86[ASN][1000 genomes]
rs7655860	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7661377	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7661470	0.86[ASN][1000 genomes]
rs7680378	0.82[AFR][1000 genomes]
rs984242	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98200000-98202200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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