Variant report

Variant	rs1993800
Chromosome Location	chr4:98249865-98249866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10008609	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs10010910	0.95[ASN][1000 genomes]
rs13114344	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1462767	0.90[ASN][1000 genomes]
rs1462768	0.97[ASN][1000 genomes]
rs1462773	0.97[ASN][1000 genomes]
rs1841791	0.97[ASN][1000 genomes]
rs1982619	0.87[ASN][1000 genomes]
rs34281401	0.96[ASN][1000 genomes]
rs34336893	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7655860	0.97[ASN][1000 genomes]
rs7661377	0.97[ASN][1000 genomes]
rs7661470	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs984242	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830014	chr4:98220259-98419635	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98248800-98250600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:98249800-98250200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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