Variant report

Variant	rs1463607
Chromosome Location	chr4:85695218-85695219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10516726	0.88[ASN][1000 genomes]
rs10516728	0.88[ASN][1000 genomes]
rs10516729	0.85[CHD][hapmap];0.88[ASN][1000 genomes]
rs11724870	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11726635	0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728145	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11730031	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11730137	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs11936391	0.91[ASN][1000 genomes]
rs11936719	0.97[ASN][1000 genomes]
rs11940030	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947757	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1473456	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1484662	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1601286	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16995917	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009212	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009218	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009245	1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17009286	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3747681	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs7681742	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692204	0.88[ASN][1000 genomes]
rs894533	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85619200-85726000	Weak transcription	Hela-S3	cervix
2	chr4:85636400-85701200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:85657000-85704200	Weak transcription	Psoas Muscle	Psoas
4	chr4:85664000-85703400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:85664000-85703600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:85664200-85703600	Weak transcription	Right Ventricle	heart
7	chr4:85668600-85703800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:85669600-85703600	Weak transcription	Aorta	Aorta
9	chr4:85670600-85700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:85672200-85702400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:85672400-85700600	Weak transcription	Spleen	Spleen
12	chr4:85672400-85707000	Weak transcription	Colonic Mucosa	Colon
13	chr4:85672800-85700600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:85672800-85703600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr4:85672800-85703600	Weak transcription	Esophagus	oesophagus
16	chr4:85672800-85703600	Weak transcription	NHLF	lung
17	chr4:85673000-85695600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr4:85673000-85700600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:85673200-85703600	Weak transcription	HepG2	liver
20	chr4:85673600-85700800	Weak transcription	Lung	lung
21	chr4:85673800-85700600	Weak transcription	Pancreas	Pancrea
22	chr4:85674600-85702200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr4:85675000-85695400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr4:85675000-85700600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:85675200-85702800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:85675200-85703600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr4:85675600-85703600	Weak transcription	Fetal Brain Male	brain
28	chr4:85675800-85700400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr4:85676200-85700800	Weak transcription	HMEC	breast
30	chr4:85676400-85695600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:85676400-85698200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr4:85676600-85700600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:85677200-85707200	Weak transcription	NHEK	skin
34	chr4:85678400-85695400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr4:85678400-85695400	Weak transcription	Osteobl	bone
36	chr4:85678400-85696600	Weak transcription	Fetal Kidney	kidney
37	chr4:85678400-85700600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr4:85678400-85700600	Weak transcription	Fetal Muscle Leg	muscle
39	chr4:85678400-85700600	Weak transcription	Gastric	stomach
40	chr4:85678400-85703600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr4:85679000-85700400	Weak transcription	Fetal Intestine Small	intestine
42	chr4:85683800-85732000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr4:85684800-85725000	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr4:85687200-85703000	Weak transcription	NH-A	brain
45	chr4:85688400-85698800	Strong transcription	Adipose Nuclei	Adipose
46	chr4:85688800-85725600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:85689000-85697000	Strong transcription	Fetal Lung	lung
48	chr4:85689400-85701400	Strong transcription	HSMM	muscle
49	chr4:85689600-85717200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr4:85689800-85700600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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