Variant report

Variant	rs894533
Chromosome Location	chr4:85664294-85664295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10516726	0.88[ASN][1000 genomes]
rs10516728	0.88[ASN][1000 genomes]
rs10516729	0.88[ASN][1000 genomes]
rs11724870	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11726635	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728145	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11730031	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11730137	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931033	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11936391	0.91[ASN][1000 genomes]
rs11936719	0.97[ASN][1000 genomes]
rs11940030	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947757	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1463607	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1484662	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1601286	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16995917	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009212	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009218	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009245	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17009286	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1994227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015631	0.88[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3747681	1.00[JPT][hapmap]
rs7681742	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692204	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv532738	chr4:85590841-85777997	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85604400-85674800	Weak transcription	Small Intestine	intestine
2	chr4:85615000-85677600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:85619200-85726000	Weak transcription	Hela-S3	cervix
4	chr4:85633400-85667800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:85636400-85701200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr4:85642800-85668000	Weak transcription	Spleen	Spleen
7	chr4:85642800-85678000	Weak transcription	Gastric	stomach
8	chr4:85648000-85676200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:85651000-85671400	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr4:85651000-85673000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr4:85651000-85673200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr4:85651000-85676800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:85651000-85678600	Strong transcription	Placenta	Placenta
14	chr4:85651200-85664400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:85652200-85664800	Strong transcription	Muscle Satellite Cultured Cells	--
16	chr4:85652200-85665000	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:85652200-85665000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:85652200-85665200	Strong transcription	Adipose Nuclei	Adipose
19	chr4:85652200-85670000	Strong transcription	Liver	Liver
20	chr4:85652200-85678400	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr4:85652200-85678400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:85652200-85679200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:85652400-85664800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr4:85652400-85665000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:85652400-85666600	Strong transcription	HUVEC	blood vessel
26	chr4:85652400-85679200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:85652600-85664600	Strong transcription	Fetal Lung	lung
28	chr4:85652600-85664800	Strong transcription	NH-A	brain
29	chr4:85652600-85665000	Strong transcription	Brain Anterior Caudate	brain
30	chr4:85652600-85671600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:85652600-85678400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:85652600-85678600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr4:85653200-85667000	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr4:85653600-85664400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:85655000-85668400	Weak transcription	Fetal Brain Male	brain
36	chr4:85655600-85664800	Strong transcription	HepG2	liver
37	chr4:85655800-85665200	Strong transcription	Fetal Kidney	kidney
38	chr4:85656400-85664800	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr4:85656400-85664800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr4:85656600-85665000	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr4:85656800-85672000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:85657000-85704200	Weak transcription	Psoas Muscle	Psoas
43	chr4:85657200-85664800	Strong transcription	Placenta Amnion	Placenta Amnion
44	chr4:85657400-85671400	Strong transcription	HSMM	muscle
45	chr4:85658000-85673800	Strong transcription	Fetal Muscle Trunk	muscle
46	chr4:85658000-85676600	Strong transcription	Fetal Intestine Large	intestine
47	chr4:85659200-85674200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr4:85659800-85678400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr4:85660400-85669200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr4:85660800-85668400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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