Variant report

Variant	rs11936391
Chromosome Location	chr4:85779738-85779739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10516726	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10516728	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10516729	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10516733	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11724870	0.83[ASN][1000 genomes]
rs11726635	0.85[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11728145	0.83[ASN][1000 genomes]
rs11730031	0.91[ASN][1000 genomes]
rs11730137	0.91[ASN][1000 genomes]
rs11931033	1.00[JPT][hapmap]
rs11936719	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11940030	0.91[ASN][1000 genomes]
rs11945313	0.84[ASW][hapmap];0.82[YRI][hapmap]
rs11947757	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1463607	0.91[ASN][1000 genomes]
rs1473456	0.91[ASN][1000 genomes]
rs1484662	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[ASN][1000 genomes]
rs1601286	1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[ASN][1000 genomes]
rs16995917	0.91[ASN][1000 genomes]
rs17009212	0.91[ASN][1000 genomes]
rs17009218	0.91[ASN][1000 genomes]
rs17009245	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17009286	1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[ASN][1000 genomes]
rs1994227	0.91[ASN][1000 genomes]
rs2015631	0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2289594	0.84[EUR][1000 genomes]
rs3747681	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs4544703	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7681742	0.91[ASN][1000 genomes]
rs7692204	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs894533	1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85701600-85783000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:85709000-85781600	Weak transcription	Esophagus	oesophagus
3	chr4:85722200-85787600	Weak transcription	Gastric	stomach
4	chr4:85723000-85821000	Weak transcription	Pancreas	Pancrea
5	chr4:85724000-85781400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:85724000-85786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:85727800-85783200	Weak transcription	Colonic Mucosa	Colon
8	chr4:85731400-85791600	Weak transcription	Lung	lung
9	chr4:85736400-85790600	Weak transcription	NHEK	skin
10	chr4:85742600-85783200	Weak transcription	Fetal Brain Male	brain
11	chr4:85751600-85783000	Weak transcription	Stomach Mucosa	stomach
12	chr4:85753200-85783400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr4:85760800-85783400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:85761400-85780200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:85762000-85781400	Weak transcription	Fetal Stomach	stomach
16	chr4:85770000-85786200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:85770000-85792800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:85770200-85787000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:85770600-85780200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:85770600-85786000	Weak transcription	Psoas Muscle	Psoas
21	chr4:85770600-85787800	Weak transcription	Right Ventricle	heart
22	chr4:85771000-85780200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:85771000-85780200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr4:85771000-85780400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:85771000-85780400	Weak transcription	Fetal Kidney	kidney
26	chr4:85771000-85783600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr4:85771000-85791400	Weak transcription	HMEC	breast
28	chr4:85771000-85791600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr4:85771200-85781000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr4:85771200-85781400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr4:85771200-85781400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr4:85771200-85783000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr4:85771200-85783200	Weak transcription	Ovary	ovary
34	chr4:85771200-85791200	Weak transcription	A549	lung
35	chr4:85771200-85798200	Weak transcription	Left Ventricle	heart
36	chr4:85771200-85803200	Weak transcription	Brain Germinal Matrix	brain
37	chr4:85771400-85780000	Weak transcription	Liver	Liver
38	chr4:85771400-85780400	Weak transcription	NHDF-Ad	bronchial
39	chr4:85771600-85791600	Weak transcription	HepG2	liver
40	chr4:85773600-85780000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:85773600-85780400	Weak transcription	NHLF	lung
42	chr4:85773600-85791400	Weak transcription	NH-A	brain
43	chr4:85774000-85779800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr4:85774200-85780000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr4:85774200-85782200	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr4:85774400-85781000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:85774600-85780800	Weak transcription	Fetal Intestine Small	intestine
48	chr4:85774600-85781800	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr4:85775600-85780000	Weak transcription	Adipose Nuclei	Adipose
50	chr4:85776000-85794200	Weak transcription	Fetal Lung	lung

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