Variant report
| Variant | rs1464326 |
|---|---|
| Chromosome Location | chr8:61058205-61058206 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:61053059..61055695-chr8:61056253..61059094,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254954 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10099715 | 0.82[EUR][1000 genomes] |
| rs10103078 | 0.82[EUR][1000 genomes] |
| rs10111209 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11781160 | 0.83[EUR][1000 genomes] |
| rs12680802 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1520269 | 0.82[EUR][1000 genomes] |
| rs1850970 | 0.89[ASN][1000 genomes] |
| rs2102927 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2139583 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2242154 | 0.95[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs2242155 | 0.95[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs2242156 | 0.95[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs2326516 | 0.83[EUR][1000 genomes] |
| rs2611343 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2681534 | 0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2681542 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2681545 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2681555 | 0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2681559 | 0.82[EUR][1000 genomes] |
| rs2681566 | 0.82[EUR][1000 genomes] |
| rs3140 | 0.95[JPT][hapmap];0.82[EUR][1000 genomes] |
| rs61452288 | 0.83[EUR][1000 genomes] |
| rs726581 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs939342 | 0.82[EUR][1000 genomes] |
| rs997573 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv917756 | chr8:60942299-61862796 | Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 74 gene(s) | inside rSNPs | diseases |
| 2 | nsv831332 | chr8:60985600-61157730 | Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:61057800-61058400 | Enhancers | Colon Smooth Muscle | Colon |
| 2 | chr8:61057800-61059200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
