Variant report

Variant	rs1850970
Chromosome Location	chr8:61086321-61086322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10099715	0.87[ASN][1000 genomes]
rs10103078	0.87[ASN][1000 genomes]
rs10103084	0.87[ASN][1000 genomes]
rs10103558	0.87[ASN][1000 genomes]
rs10111209	0.88[ASN][1000 genomes]
rs11775573	0.82[ASN][1000 genomes]
rs11775600	0.82[ASN][1000 genomes]
rs11781160	0.87[ASN][1000 genomes]
rs12680802	0.87[ASN][1000 genomes]
rs1356828	0.82[ASN][1000 genomes]
rs1464326	0.89[ASN][1000 genomes]
rs1520269	0.88[ASN][1000 genomes]
rs2102927	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2139583	0.88[ASN][1000 genomes]
rs2242154	0.87[ASN][1000 genomes]
rs2242155	0.87[ASN][1000 genomes]
rs2242156	0.87[ASN][1000 genomes]
rs2326516	0.86[ASN][1000 genomes]
rs2446689	0.94[EUR][1000 genomes]
rs2611343	0.90[ASN][1000 genomes]
rs2681534	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2681542	0.82[ASN][1000 genomes]
rs2681554	0.82[ASN][1000 genomes]
rs2681555	0.97[ASN][1000 genomes]
rs2681559	0.88[ASN][1000 genomes]
rs2681566	0.88[ASN][1000 genomes]
rs3140	0.87[ASN][1000 genomes]
rs4631456	0.87[ASN][1000 genomes]
rs61452288	0.87[ASN][1000 genomes]
rs726581	0.97[ASN][1000 genomes]
rs72663286	0.87[ASN][1000 genomes]
rs763981	0.82[ASN][1000 genomes]
rs939342	0.88[ASN][1000 genomes]
rs997573	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831332	chr8:60985600-61157730	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61085800-61086600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:61086000-61086400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:61086200-61086600	Enhancers	Fetal Muscle Trunk	muscle
4	chr8:61086200-61087400	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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