Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10098343	0.80[EUR][1000 genomes]
rs11775573	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11775600	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1356828	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464326	0.95[JPT][hapmap]
rs1520273	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1520274	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1850970	0.82[ASN][1000 genomes]
rs2139583	0.82[AFR][1000 genomes]
rs2242154	0.81[CHD][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap]
rs2242155	0.81[CHD][hapmap];0.90[JPT][hapmap]
rs2242156	0.81[CHD][hapmap];0.90[JPT][hapmap]
rs2681534	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2681545	0.95[JPT][hapmap]
rs2681555	0.85[ASN][1000 genomes]
rs2681558	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3140	0.90[JPT][hapmap]
rs720208	0.80[EUR][1000 genomes]
rs726581	0.85[ASN][1000 genomes]
rs763981	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831332	chr8:60985600-61157730	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1814106	chr8:61089580-61105199	Strong transcription Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1810985	chr8:61089580-61117903	Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2681554	TOX	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61086400-61092400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:61087800-61089600	Enhancers	Adipose Nuclei	Adipose
3	chr8:61088800-61089800	Enhancers	K562	blood

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