Variant report

Variant	rs1520273
Chromosome Location	chr8:61090895-61090896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61085167..61087969-chr8:61090479..61092210,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10098647	0.82[AMR][1000 genomes]
rs10099715	0.84[ASN][1000 genomes]
rs10103078	0.84[ASN][1000 genomes]
rs10103084	0.84[ASN][1000 genomes]
rs10103558	0.84[ASN][1000 genomes]
rs10111209	0.83[ASN][1000 genomes]
rs11775573	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11775600	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11781160	0.84[ASN][1000 genomes]
rs11784705	0.83[AMR][1000 genomes]
rs12680802	0.84[ASN][1000 genomes]
rs1356828	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1464326	0.91[JPT][hapmap]
rs1520269	0.86[ASN][1000 genomes]
rs1520274	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2139583	0.86[ASN][1000 genomes]
rs2242154	0.87[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2242155	0.87[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2242156	0.87[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2326516	0.84[ASN][1000 genomes]
rs2681534	0.91[JPT][hapmap]
rs2681545	0.90[JPT][hapmap]
rs2681554	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2681558	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2681559	0.86[ASN][1000 genomes]
rs2681566	0.86[ASN][1000 genomes]
rs3140	0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs4631456	0.84[ASN][1000 genomes]
rs61452288	0.84[ASN][1000 genomes]
rs72663286	0.84[ASN][1000 genomes]
rs763981	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7841174	0.81[AMR][1000 genomes]
rs939342	0.86[ASN][1000 genomes]
rs9657069	0.81[AMR][1000 genomes]
rs997573	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831332	chr8:60985600-61157730	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1814106	chr8:61089580-61105199	Strong transcription Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1810985	chr8:61089580-61117903	Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61086400-61092400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:61089800-61107800	Weak transcription	K562	blood
3	chr8:61090600-61100600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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