Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10099715	0.82[EUR][1000 genomes]
rs10103078	0.82[EUR][1000 genomes]
rs10111209	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11781160	0.83[EUR][1000 genomes]
rs12680802	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1464326	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1520269	0.82[EUR][1000 genomes]
rs1850970	0.89[ASN][1000 genomes]
rs2102927	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2139583	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2242154	0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs2242155	0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs2242156	0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs2326516	0.83[EUR][1000 genomes]
rs2611343	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2681534	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2681542	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2681555	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2681559	0.82[EUR][1000 genomes]
rs2681566	0.82[EUR][1000 genomes]
rs3140	0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs61452288	0.83[EUR][1000 genomes]
rs726581	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs939342	0.82[EUR][1000 genomes]
rs997573	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831332	chr8:60985600-61157730	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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