Variant report

Variant	rs1465888
Chromosome Location	chr9:92715438-92715439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92709715..92711807-chr9:92713362..92716439,3	MCF-7	breast:
2	chr9:92714067..92716934-chr9:92720447..92722876,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10117261	0.81[EUR][1000 genomes]
rs10123198	0.81[EUR][1000 genomes]
rs1999100	0.80[EUR][1000 genomes]
rs2196922	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6479520	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7026182	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7030189	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7035196	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7038428	0.80[EUR][1000 genomes]
rs721833	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92705600-92719200	Weak transcription	Ovary	ovary
2	chr9:92706000-92723600	Weak transcription	HSMMtube	muscle
3	chr9:92707000-92716200	Weak transcription	Psoas Muscle	Psoas
4	chr9:92707000-92716200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:92711800-92715800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:92711800-92716200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:92713400-92715800	Enhancers	NHLF	lung
8	chr9:92713600-92715800	Enhancers	NHDF-Ad	bronchial
9	chr9:92713600-92716200	Weak transcription	Lung	lung
10	chr9:92713600-92718400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:92714200-92715600	Enhancers	Osteobl	bone
12	chr9:92714200-92718400	Enhancers	Fetal Stomach	stomach
13	chr9:92714400-92716200	Weak transcription	Adipose Nuclei	Adipose
14	chr9:92714400-92716200	Weak transcription	Brain Anterior Caudate	brain
15	chr9:92714400-92716200	Weak transcription	Left Ventricle	heart
16	chr9:92714600-92715600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:92714600-92715600	Enhancers	NHEK	skin
18	chr9:92714800-92716400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:92715000-92715600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:92715200-92716200	Weak transcription	Fetal Lung	lung
21	chr9:92715200-92716600	Enhancers	Primary T cells fromperipheralblood	blood
22	chr9:92715200-92716800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr9:92715200-92717200	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr9:92715400-92715800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr9:92715400-92716200	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links