Variant report

Variant	rs7035196
Chromosome Location	chr9:92722593-92722594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10117261	1.00[ASW][hapmap];0.96[CEU][hapmap];0.87[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10120740	0.90[EUR][1000 genomes]
rs10123198	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10821475	0.92[CEU][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap]
rs1465888	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1999100	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6479520	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6479580	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7026182	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7030189	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038428	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs721833	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7035196	SYK	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92706000-92723600	Weak transcription	HSMMtube	muscle
2	chr9:92716800-92723200	Weak transcription	Pancreas	Pancrea
3	chr9:92716800-92724000	Weak transcription	Esophagus	oesophagus
4	chr9:92717000-92724200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:92718200-92723600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr9:92718400-92724000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:92719400-92723400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:92719600-92724200	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:92719800-92723600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr9:92719800-92723800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:92720600-92724000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:92721200-92723800	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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