Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92725702..92727913-chr9:92735894..92737727,2	K562	blood:
2	chr9:92219486..92222426-chr9:92726287..92727881,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10118552	0.81[ASN][1000 genomes]
rs10120740	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10123198	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761354	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs10821382	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs10821386	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs10821475	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs10821501	0.81[ASN][1000 genomes]
rs10993330	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs10993331	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs10993333	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs10993699	0.81[ASN][1000 genomes]
rs1443364	0.80[ASN][1000 genomes]
rs1465888	0.81[EUR][1000 genomes]
rs1999100	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6479520	0.88[EUR][1000 genomes]
rs6479580	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs652454	0.82[GIH][hapmap]
rs657899	0.82[GIH][hapmap]
rs7021679	0.81[ASN][1000 genomes]
rs7026182	0.87[EUR][1000 genomes]
rs7030189	0.89[EUR][1000 genomes]
rs7035196	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7038428	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs721833	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7866392	0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.81[TSI][hapmap];0.81[ASN][1000 genomes]
rs7874166	0.91[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424181	chr9:92723632-92727930	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10117261	SYK	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92723600-92727800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:92724000-92727400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:92724400-92727000	Weak transcription	Right Atrium	heart
4	chr9:92724800-92729800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:92724800-92732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:92725000-92727600	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:92725000-92729600	Weak transcription	Fetal Intestine Small	intestine
8	chr9:92725400-92731000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:92725600-92738200	Weak transcription	Lung	lung
10	chr9:92726000-92727000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:92726000-92727400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr9:92726200-92727800	Enhancers	Liver	Liver
13	chr9:92726800-92727400	Enhancers	NHDF-Ad	bronchial
14	chr9:92726800-92727800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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