Variant report

Variant	rs10993699
Chromosome Location	chr9:92769518-92769519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10117261	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs10118552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120740	0.84[ASN][1000 genomes]
rs10123198	0.80[ASN][1000 genomes]
rs10821475	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs10821501	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443364	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1999100	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6479580	0.81[ASN][1000 genomes]
rs7021679	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038428	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs721833	0.81[ASN][1000 genomes]
rs7866392	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874166	0.96[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92757400-92770000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:92757600-92770000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:92762600-92769600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:92762800-92769600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:92763600-92769800	Weak transcription	Gastric	stomach
6	chr9:92763600-92769800	Weak transcription	NHDF-Ad	bronchial
7	chr9:92764200-92771200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr9:92764800-92769800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:92765000-92769800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:92765000-92770000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr9:92765000-92770400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:92765200-92769800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:92765200-92771400	Weak transcription	Colonic Mucosa	Colon
14	chr9:92765400-92769800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:92765400-92769800	Weak transcription	Fetal Intestine Large	intestine
16	chr9:92765800-92775200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr9:92766600-92769800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr9:92766600-92769800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr9:92766600-92770000	Weak transcription	Psoas Muscle	Psoas
20	chr9:92767000-92769600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:92767200-92769800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:92767800-92769600	Weak transcription	Adipose Nuclei	Adipose
23	chr9:92768000-92769800	Weak transcription	Ovary	ovary
24	chr9:92768000-92774800	Weak transcription	Fetal Intestine Small	intestine
25	chr9:92769000-92769600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr9:92769000-92769800	Enhancers	HSMM	muscle
27	chr9:92769000-92771400	Enhancers	Primary B cells from cord blood	blood
28	chr9:92769000-92771600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:92769000-92771800	Enhancers	HSMMtube	muscle
30	chr9:92769000-92772000	Enhancers	Fetal Muscle Leg	muscle
31	chr9:92769000-92773400	Enhancers	Primary B cells from peripheral blood	blood
32	chr9:92769200-92769600	Weak transcription	Stomach Mucosa	stomach
33	chr9:92769200-92769800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr9:92769200-92770800	Enhancers	Placenta	Placenta
35	chr9:92769200-92770800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr9:92769200-92771600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:92769400-92769800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:92769400-92769800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr9:92769400-92770000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr9:92769400-92770200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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