Variant report

Variant	rs7874166
Chromosome Location	chr9:92761983-92761984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92761640..92763658-chr9:92766942..92769443,2	MCF-7	breast:
2	chr9:92753705..92756579-chr9:92759778..92762031,2	MCF-7	breast:
3	chr9:92758301..92760371-chr9:92760953..92763123,2	MCF-7	breast:
4	chr9:92216749..92221414-chr9:92756839..92763409,10	MCF-7	breast:
5	chr9:92218340..92220049-chr9:92760293..92762561,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10117261	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs10118552	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10120740	0.85[ASN][1000 genomes]
rs10123198	0.81[ASN][1000 genomes]
rs10821475	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs10821501	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993699	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1443364	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1999100	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6479580	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs652454	0.85[CEU][hapmap]
rs657899	0.85[CEU][hapmap]
rs7021679	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7038428	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs721833	0.81[ASN][1000 genomes]
rs7866392	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92753600-92765400	Enhancers	Fetal Intestine Large	intestine
2	chr9:92754000-92765400	Enhancers	Fetal Intestine Small	intestine
3	chr9:92755000-92762000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr9:92757200-92762400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:92757400-92770000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr9:92757600-92762000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:92757600-92762200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:92757600-92764200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:92757600-92770000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr9:92757800-92762200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:92758000-92762200	Weak transcription	Fetal Kidney	kidney
12	chr9:92758200-92762200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:92758800-92767600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:92760600-92762000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:92760600-92762000	Enhancers	NHDF-Ad	bronchial
16	chr9:92760800-92762000	Enhancers	Colon Smooth Muscle	Colon
17	chr9:92760800-92762600	Enhancers	Esophagus	oesophagus
18	chr9:92760800-92766000	Enhancers	Fetal Brain Male	brain
19	chr9:92761000-92762000	Enhancers	Primary B cells from cord blood	blood
20	chr9:92761000-92762000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:92761000-92762000	Enhancers	Brain Germinal Matrix	brain
22	chr9:92761000-92762200	Enhancers	Fetal Heart	heart
23	chr9:92761000-92762200	Enhancers	Fetal Lung	lung
24	chr9:92761000-92762600	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr9:92761000-92762600	Enhancers	Pancreas	Pancrea
26	chr9:92761200-92762000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:92761200-92762000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr9:92761200-92762000	Enhancers	Primary hematopoietic stem cells	blood
29	chr9:92761200-92762000	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr9:92761200-92762000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr9:92761200-92762000	Enhancers	NHEK	skin
32	chr9:92761200-92762600	Enhancers	HMEC	breast
33	chr9:92761200-92763600	Enhancers	Small Intestine	intestine
34	chr9:92761200-92765400	Enhancers	Fetal Thymus	thymus
35	chr9:92761200-92767400	Enhancers	Fetal Muscle Leg	muscle
36	chr9:92761400-92762000	Enhancers	Adipose Nuclei	Adipose
37	chr9:92761400-92762000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
38	chr9:92761400-92762400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr9:92761600-92762000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr9:92761600-92762000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr9:92761600-92762000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr9:92761600-92762000	Enhancers	Brain Hippocampus Middle	brain
43	chr9:92761600-92762000	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr9:92761600-92762000	Enhancers	Thymus	Thymus
45	chr9:92761600-92762000	Enhancers	A549	lung
46	chr9:92761600-92762000	Enhancers	Osteobl	bone
47	chr9:92761600-92762200	Enhancers	Primary T cells from cord blood	blood
48	chr9:92761600-92762200	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr9:92761600-92762200	Enhancers	Aorta	Aorta
50	chr9:92761600-92762200	Enhancers	Brain Cingulate Gyrus	brain

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