Variant report

Variant	rs10821475
Chromosome Location	chr9:92739891-92739892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10117261	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10118552	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10120740	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10123198	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10761354	0.83[CHB][hapmap]
rs10820826	0.82[CEU][hapmap]
rs10821382	0.83[CHB][hapmap]
rs10821386	0.86[CHB][hapmap]
rs10821471	0.82[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs10821474	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs10821501	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10993330	0.83[CHB][hapmap]
rs10993331	0.83[CHB][hapmap]
rs10993333	0.86[CHB][hapmap]
rs10993699	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1443364	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1999100	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4744467	0.82[AFR][1000 genomes]
rs6479520	0.87[EUR][1000 genomes]
rs6479580	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs652454	0.82[GIH][hapmap]
rs657899	0.82[GIH][hapmap]
rs7021679	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7025825	0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs7026182	0.86[EUR][1000 genomes]
rs7030189	0.87[EUR][1000 genomes]
rs7035196	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7038428	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs721833	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7866392	0.95[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7874166	0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10821475	SYK	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92733400-92740200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:92738200-92740400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr9:92738400-92743000	Weak transcription	Aorta	Aorta
4	chr9:92738800-92740200	Weak transcription	Fetal Lung	lung

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