Variant report

Variant	rs10821471
Chromosome Location	chr9:92738714-92738715
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10821474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821475	0.82[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.92[YRI][hapmap]
rs10821478	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821479	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821505	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821512	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10991697	0.81[CEU][hapmap]
rs10993594	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10993656	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1348383	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1443359	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2379198	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35216191	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4289934	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4744020	0.86[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs4744467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6479612	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7025825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980139	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10821471	SYK	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92733400-92740200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:92737400-92738800	Enhancers	Fetal Lung	lung
3	chr9:92738200-92740400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr9:92738400-92743000	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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