Variant report

Variant	rs10993656
Chromosome Location	chr9:92761324-92761325
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92753705..92756579-chr9:92759778..92762031,2	MCF-7	breast:
2	chr9:92758301..92760371-chr9:92760953..92763123,2	MCF-7	breast:
3	chr9:92739296..92741808-chr9:92758775..92761522,2	MCF-7	breast:
4	chr9:92216749..92221414-chr9:92756839..92763409,10	MCF-7	breast:
5	chr9:92218340..92220049-chr9:92760293..92762561,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237626	Chromatin interaction
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10820817	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10821471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821478	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821479	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10821505	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821512	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10991697	0.86[CEU][hapmap];0.85[AMR][1000 genomes]
rs10993594	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1348383	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1443359	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17361084	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2379198	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35216191	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4289934	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744020	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4744467	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6479612	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7025825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7866392	0.88[YRI][hapmap]
rs920753	0.86[AMR][1000 genomes]
rs980139	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92752400-92761600	Weak transcription	Aorta	Aorta
2	chr9:92753600-92765400	Enhancers	Fetal Intestine Large	intestine
3	chr9:92754000-92765400	Enhancers	Fetal Intestine Small	intestine
4	chr9:92755000-92762000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr9:92756000-92761800	Weak transcription	Brain Substantia Nigra	brain
6	chr9:92756200-92761800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr9:92756800-92761600	Weak transcription	Psoas Muscle	Psoas
8	chr9:92757200-92761800	Weak transcription	Hela-S3	cervix
9	chr9:92757200-92762400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr9:92757400-92761600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:92757400-92761600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:92757400-92761600	Weak transcription	A549	lung
13	chr9:92757400-92761800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:92757400-92770000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:92757600-92761600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr9:92757600-92761800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:92757600-92762000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr9:92757600-92762200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:92757600-92764200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:92757600-92770000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr9:92757800-92762200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr9:92758000-92761600	Weak transcription	Left Ventricle	heart
23	chr9:92758000-92761600	Weak transcription	Right Ventricle	heart
24	chr9:92758000-92761800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr9:92758000-92762200	Weak transcription	Fetal Kidney	kidney
26	chr9:92758200-92761600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr9:92758200-92761600	Weak transcription	Ovary	ovary
28	chr9:92758200-92761600	Weak transcription	Spleen	Spleen
29	chr9:92758200-92761800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:92758200-92762200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr9:92758600-92761400	Weak transcription	Adipose Nuclei	Adipose
32	chr9:92758600-92761600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr9:92758600-92761800	Enhancers	Stomach Mucosa	stomach
34	chr9:92758800-92761600	Weak transcription	Right Atrium	heart
35	chr9:92758800-92761800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr9:92758800-92767600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr9:92759200-92761600	Weak transcription	Placenta	Placenta
38	chr9:92759400-92761600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr9:92759600-92761400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr9:92759600-92761800	Weak transcription	HSMM	muscle
41	chr9:92760000-92761600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr9:92760200-92761600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr9:92760600-92762000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr9:92760600-92762000	Enhancers	NHDF-Ad	bronchial
45	chr9:92760800-92761600	Enhancers	Stomach Smooth Muscle	stomach
46	chr9:92760800-92761800	Enhancers	Colonic Mucosa	Colon
47	chr9:92760800-92761800	Enhancers	Duodenum Mucosa	Duodenum
48	chr9:92760800-92762000	Enhancers	Colon Smooth Muscle	Colon
49	chr9:92760800-92762600	Enhancers	Esophagus	oesophagus
50	chr9:92760800-92766000	Enhancers	Fetal Brain Male	brain

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