Variant report

Variant	rs1348383
Chromosome Location	chr9:92768049-92768050
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92761640..92763658-chr9:92766942..92769443,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10820817	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10820826	0.83[AMR][1000 genomes]
rs10821471	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821478	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821479	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821501	0.82[AFR][1000 genomes]
rs10821505	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821512	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991697	0.83[CEU][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10993594	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10993656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1443359	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1443364	0.82[AFR][1000 genomes]
rs17361084	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2379198	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35216191	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4289934	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744020	0.86[CEU][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4744467	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs586750	0.80[AFR][1000 genomes]
rs6479612	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7021679	0.82[AFR][1000 genomes]
rs7025825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs920753	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs980139	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92757400-92770000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:92757600-92770000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:92762600-92769600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:92762800-92769600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:92763600-92769800	Weak transcription	Gastric	stomach
6	chr9:92763600-92769800	Weak transcription	NHDF-Ad	bronchial
7	chr9:92764200-92771200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr9:92764800-92769800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr9:92765000-92769800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:92765000-92770000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr9:92765000-92770400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:92765200-92769800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr9:92765200-92771400	Weak transcription	Colonic Mucosa	Colon
14	chr9:92765400-92769000	Weak transcription	Stomach Mucosa	stomach
15	chr9:92765400-92769400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:92765400-92769800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:92765400-92769800	Weak transcription	Fetal Intestine Large	intestine
18	chr9:92765800-92775200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr9:92766200-92769200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:92766400-92769000	Weak transcription	HSMM	muscle
21	chr9:92766600-92769000	Weak transcription	HSMMtube	muscle
22	chr9:92766600-92769800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr9:92766600-92769800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr9:92766600-92770000	Weak transcription	Psoas Muscle	Psoas
25	chr9:92766800-92769200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:92767000-92769600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:92767200-92769400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:92767200-92769800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr9:92767800-92769600	Weak transcription	Adipose Nuclei	Adipose
30	chr9:92768000-92769000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr9:92768000-92769000	Weak transcription	Primary B cells from cord blood	blood
32	chr9:92768000-92769000	Weak transcription	Fetal Muscle Leg	muscle
33	chr9:92768000-92769200	Weak transcription	Placenta	Placenta
34	chr9:92768000-92769800	Weak transcription	Ovary	ovary
35	chr9:92768000-92774800	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links