Variant report

Variant	rs1443359
Chromosome Location	chr9:92750254-92750255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92748243..92750612-chr9:92751364..92753556,2	MCF-7	breast:
2	chr9:92743278..92746160-chr9:92749145..92750890,2	MCF-7	breast:
3	chr9:92748557..92752468-chr9:92755294..92758086,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10821471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821478	0.92[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821479	0.92[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821505	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10821512	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10991697	0.83[CEU][hapmap]
rs10993594	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993656	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1348383	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2379198	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35216191	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4289934	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4744020	0.86[CEU][hapmap]
rs4744467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479612	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7025825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs980139	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92745000-92752800	Weak transcription	Liver	Liver
2	chr9:92745000-92755400	Weak transcription	Psoas Muscle	Psoas
3	chr9:92747600-92750400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:92747600-92750800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:92747600-92751400	Weak transcription	Right Atrium	heart
6	chr9:92747600-92753200	Weak transcription	NHEK	skin
7	chr9:92748600-92754400	Weak transcription	Lung	lung
8	chr9:92748800-92754000	Weak transcription	Esophagus	oesophagus
9	chr9:92749000-92752800	Enhancers	Placenta	Placenta
10	chr9:92749000-92753600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr9:92749200-92753000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr9:92749400-92750600	Enhancers	Primary hematopoietic stem cells	blood
13	chr9:92749400-92750600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:92749600-92752200	Enhancers	Fetal Heart	heart
15	chr9:92749800-92750400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:92750000-92751000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr9:92750000-92751600	Enhancers	HSMM	muscle
18	chr9:92750000-92751600	Enhancers	HSMMtube	muscle
19	chr9:92750200-92750400	Enhancers	Primary B cells from cord blood	blood
20	chr9:92750200-92751600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr9:92750200-92752400	Enhancers	Fetal Muscle Leg	muscle
22	chr9:92750200-92759800	Enhancers	Primary monocytes fromperipheralblood	blood

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