Variant report

Variant	rs980139
Chromosome Location	chr9:92771106-92771107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92766437..92768027-chr9:92770302..92772264,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10820817	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10820826	0.82[AMR][1000 genomes]
rs10821471	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821474	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821478	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821479	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821505	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821512	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10991697	0.83[CEU][hapmap];0.88[AMR][1000 genomes]
rs10993594	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993656	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1348383	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1443359	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17361084	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2379198	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35216191	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4289934	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744020	0.86[CEU][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4744467	1.00[CEU][hapmap];0.96[CHB][hapmap];0.87[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6479612	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7025825	1.00[CEU][hapmap];0.96[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs920753	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92764200-92771200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:92765200-92771400	Weak transcription	Colonic Mucosa	Colon
3	chr9:92765800-92775200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:92768000-92774800	Weak transcription	Fetal Intestine Small	intestine
5	chr9:92769000-92771400	Enhancers	Primary B cells from cord blood	blood
6	chr9:92769000-92771600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:92769000-92771800	Enhancers	HSMMtube	muscle
8	chr9:92769000-92772000	Enhancers	Fetal Muscle Leg	muscle
9	chr9:92769000-92773400	Enhancers	Primary B cells from peripheral blood	blood
10	chr9:92769200-92771600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:92769600-92771200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr9:92769600-92772000	Enhancers	Stomach Mucosa	stomach
13	chr9:92769800-92771200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:92770000-92772200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr9:92770000-92773200	Enhancers	Primary hematopoietic stem cells	blood
16	chr9:92770200-92771200	Weak transcription	Fetal Thymus	thymus
17	chr9:92770200-92771400	Weak transcription	Gastric	stomach
18	chr9:92770200-92771600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr9:92770400-92771400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr9:92770600-92773000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:92770800-92771600	Weak transcription	Adipose Nuclei	Adipose
22	chr9:92770800-92771600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr9:92770800-92771800	Enhancers	HSMM	muscle
24	chr9:92770800-92774800	Weak transcription	Fetal Intestine Large	intestine
25	chr9:92770800-92775000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:92770800-92775400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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