Variant report

Variant	rs4289934
Chromosome Location	chr9:92752520-92752521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92748243..92750612-chr9:92751364..92753556,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10821471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821474	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821478	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821479	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821505	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821512	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10993594	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10993656	1.00[CHB][hapmap];0.87[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1348383	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1443359	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2379198	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35216191	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744467	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479612	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7025825	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs980139	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92745000-92752800	Weak transcription	Liver	Liver
2	chr9:92745000-92755400	Weak transcription	Psoas Muscle	Psoas
3	chr9:92747600-92753200	Weak transcription	NHEK	skin
4	chr9:92748600-92754400	Weak transcription	Lung	lung
5	chr9:92748800-92754000	Weak transcription	Esophagus	oesophagus
6	chr9:92749000-92752800	Enhancers	Placenta	Placenta
7	chr9:92749000-92753600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:92749200-92753000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr9:92750200-92759800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr9:92750400-92755600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:92750600-92755400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr9:92750800-92755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:92751400-92752800	Enhancers	Left Ventricle	heart
14	chr9:92751600-92754200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:92751600-92754400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr9:92751600-92756000	Weak transcription	HSMMtube	muscle
17	chr9:92751600-92756200	Weak transcription	HSMM	muscle
18	chr9:92751800-92752800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr9:92751800-92756000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:92752000-92752800	Enhancers	Right Atrium	heart
21	chr9:92752200-92754000	Weak transcription	Fetal Heart	heart
22	chr9:92752200-92755200	Weak transcription	Primary B cells from cord blood	blood
23	chr9:92752200-92757400	Enhancers	Stomach Mucosa	stomach
24	chr9:92752400-92752600	Bivalent Enhancer	Fetal Muscle Leg	muscle
25	chr9:92752400-92761600	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links