Variant report

Variant	rs1466108
Chromosome Location	chr13:39342014-39342015
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2034421	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2442361	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7318983	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7329184	0.91[EUR][1000 genomes]
rs9576609	0.91[EUR][1000 genomes]
rs9576610	0.91[EUR][1000 genomes]
rs9603421	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39333200-39343200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr13:39338000-39345000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr13:39338000-39365400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:39338400-39345000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:39338400-39345200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:39338600-39351800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr13:39339000-39343800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:39340400-39342200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr13:39340600-39343600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr13:39341000-39342200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:39341200-39342200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr13:39341600-39342800	Enhancers	Left Ventricle	heart
13	chr13:39341800-39342600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:39342000-39342400	Weak transcription	Fetal Heart	heart
15	chr13:39342000-39351600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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