Variant report

Variant	rs2034421
Chromosome Location	chr13:39344344-39344345
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1466108	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2442361	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7318983	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7329184	0.91[EUR][1000 genomes]
rs9576609	0.91[EUR][1000 genomes]
rs9576610	0.91[EUR][1000 genomes]
rs9603421	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39338000-39345000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:39338000-39365400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:39338400-39345000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:39338400-39345200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:39338600-39351800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:39342000-39351600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:39342200-39350200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr13:39343600-39346400	Weak transcription	Fetal Heart	heart
9	chr13:39344000-39347000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr13:39344000-39347200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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