Variant report

Variant	rs9603421
Chromosome Location	chr13:39340661-39340662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1466108	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2034421	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2442361	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7318983	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7329184	0.91[EUR][1000 genomes]
rs7988180	0.84[AFR][1000 genomes]
rs9576609	0.91[EUR][1000 genomes]
rs9576610	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39333200-39343200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr13:39338000-39341000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr13:39338000-39341200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr13:39338000-39341600	Weak transcription	Fetal Brain Male	brain
5	chr13:39338000-39345000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr13:39338000-39365400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:39338200-39341800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:39338400-39341600	Weak transcription	Fetal Lung	lung
9	chr13:39338400-39345000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr13:39338400-39345200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr13:39338600-39351800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr13:39339000-39343800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr13:39339800-39341600	Enhancers	Brain Anterior Caudate	brain
14	chr13:39340000-39341400	Enhancers	Brain Cingulate Gyrus	brain
15	chr13:39340000-39342000	Enhancers	Brain Substantia Nigra	brain
16	chr13:39340200-39342000	Enhancers	Brain Angular Gyrus	brain
17	chr13:39340400-39340800	Weak transcription	Brain Hippocampus Middle	brain
18	chr13:39340400-39342200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr13:39340600-39343600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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