Variant report

Variant	rs1466465
Chromosome Location	chr12:26330500-26330501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1466466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1480041	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1480042	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1600517	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1600518	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2729648	1.00[AMR][1000 genomes]
rs4963964	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4963967	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6487533	0.82[AFR][1000 genomes]
rs6487534	0.93[AFR][1000 genomes]
rs6487535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7304897	1.00[AMR][1000 genomes]
rs7316094	1.00[AMR][1000 genomes]
rs7959650	1.00[AMR][1000 genomes]
rs9804755	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3411526	chr12:26330364-26330866	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26328200-26331200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr12:26329200-26331000	Enhancers	Fetal Intestine Small	intestine
3	chr12:26329200-26331200	Enhancers	Fetal Intestine Large	intestine
4	chr12:26329400-26330600	Enhancers	Stomach Mucosa	stomach
5	chr12:26329400-26331200	Enhancers	Small Intestine	intestine
6	chr12:26329800-26331000	Enhancers	Duodenum Mucosa	Duodenum
7	chr12:26330200-26330600	Enhancers	GM12878-XiMat	blood
8	chr12:26330200-26330600	Enhancers	HMEC	breast
9	chr12:26330200-26330800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:26330400-26330600	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr12:26330400-26330800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:26330400-26330800	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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