Variant report

Variant	rs1480042
Chromosome Location	chr12:26308089-26308090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1466465	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1466466	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1480041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1600517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1600518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2729648	1.00[AMR][1000 genomes]
rs4963964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4963967	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6487534	0.89[AFR][1000 genomes]
rs6487535	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7304897	1.00[AMR][1000 genomes]
rs7316094	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7959650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26302800-26308200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:26303200-26311600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:26304000-26308600	Weak transcription	Fetal Thymus	thymus
4	chr12:26305000-26311200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr12:26305400-26308400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:26305400-26308800	Enhancers	Primary B cells from peripheral blood	blood
7	chr12:26306000-26311400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:26306000-26311400	Weak transcription	Gastric	stomach
9	chr12:26306400-26308400	Enhancers	GM12878-XiMat	blood
10	chr12:26306600-26311800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr12:26306800-26308600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr12:26306800-26309200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:26306800-26309600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr12:26306800-26311600	Weak transcription	Spleen	Spleen
15	chr12:26307000-26308400	Enhancers	NHEK	skin
16	chr12:26307000-26309200	Weak transcription	Brain Anterior Caudate	brain
17	chr12:26307000-26309400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr12:26307000-26309600	Weak transcription	Fetal Intestine Small	intestine
19	chr12:26307000-26309800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr12:26307000-26311600	Weak transcription	Esophagus	oesophagus
21	chr12:26307200-26309400	Enhancers	Primary B cells from cord blood	blood
22	chr12:26307200-26309400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr12:26307200-26309600	Weak transcription	Stomach Mucosa	stomach
24	chr12:26307200-26309800	Weak transcription	A549	lung
25	chr12:26307600-26309200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr12:26307800-26308200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr12:26307800-26311000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr12:26308000-26309200	Weak transcription	Pancreas	Pancrea
29	chr12:26308000-26316800	Weak transcription	HMEC	breast

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