Variant report

Variant	rs1600517
Chromosome Location	chr12:26313702-26313703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1466465	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1466466	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1480041	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1480042	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1545785	0.84[ASW][hapmap];0.84[MKK][hapmap]
rs1600518	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2729648	1.00[AMR][1000 genomes]
rs4963964	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4963967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6487533	0.82[AFR][1000 genomes]
rs6487534	0.93[AFR][1000 genomes]
rs6487535	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7304897	1.00[AMR][1000 genomes]
rs7316094	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7959650	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9804755	0.82[AFR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26308000-26316800	Weak transcription	HMEC	breast
2	chr12:26310200-26316600	Enhancers	Primary B cells from peripheral blood	blood
3	chr12:26312200-26315600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:26312400-26317200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:26313600-26314800	Weak transcription	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links