Variant report

Variant	rs1469304
Chromosome Location	chr18:28783774-28783775
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:28781545..28784523-chr18:28786005..28788278,2	MCF-7	breast:
2	chr18:28783058..28785177-chr18:28785602..28787795,2	K562	blood:
3	chr18:28781990..28784653-chr18:28785130..28789773,4	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1365296	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs1469300	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469301	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469302	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469945	0.91[CEU][hapmap]
rs2011596	0.92[EUR][1000 genomes]
rs2162275	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2912328	0.96[EUR][1000 genomes]
rs2919996	0.91[CEU][hapmap]
rs2919998	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2919999	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506895	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506896	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28771000-28789000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr18:28779800-28786200	Weak transcription	Hela-S3	cervix
3	chr18:28780000-28788400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr18:28780200-28786800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr18:28782400-28783800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr18:28782600-28787600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr18:28782800-28784200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr18:28782800-28784200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr18:28783000-28783800	Enhancers	Placenta	Placenta
10	chr18:28783000-28784000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:28783000-28784000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr18:28783000-28784000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr18:28783000-28784000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr18:28783000-28784000	Enhancers	Colonic Mucosa	Colon
15	chr18:28783000-28784000	Enhancers	Fetal Lung	lung
16	chr18:28783000-28784000	Enhancers	Stomach Mucosa	stomach
17	chr18:28783000-28784200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr18:28783000-28784200	Enhancers	Fetal Heart	heart
19	chr18:28783200-28783800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:28783200-28783800	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr18:28783200-28783800	Enhancers	HMEC	breast
22	chr18:28783200-28784000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr18:28783200-28784000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr18:28783200-28784000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr18:28783200-28784000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr18:28783200-28784000	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr18:28783200-28784000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr18:28783200-28784000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr18:28783200-28784000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr18:28783200-28784200	Enhancers	Esophagus	oesophagus
31	chr18:28783200-28784200	Flanking Active TSS	NHEK	skin
32	chr18:28783200-28784400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr18:28783200-28787200	Active TSS	Duodenum Mucosa	Duodenum
34	chr18:28783400-28783800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr18:28783400-28783800	Active TSS	Right Atrium	heart
36	chr18:28783400-28783800	Active TSS	HepG2	liver
37	chr18:28783400-28784000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr18:28783400-28784000	Active TSS	Fetal Intestine Small	intestine
39	chr18:28783400-28784200	Active TSS	Fetal Intestine Large	intestine
40	chr18:28783400-28784800	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr18:28783400-28785200	Enhancers	A549	lung
42	chr18:28783400-28786600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr18:28783400-28791200	Weak transcription	Right Ventricle	heart
44	chr18:28783600-28783800	Enhancers	Left Ventricle	heart
45	chr18:28783600-28784000	Enhancers	Primary hematopoietic stem cells	blood
46	chr18:28783600-28784200	Enhancers	Liver	Liver
47	chr18:28783600-28784800	Weak transcription	Pancreas	Pancrea
48	chr18:28783600-28784800	Weak transcription	K562	blood
49	chr18:28783600-28786600	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr18:28783600-28786800	Enhancers	Primary B cells from cord blood	blood

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