Variant report

Variant	rs2912328
Chromosome Location	chr18:28778135-28778136
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:28775974..28778249-chr18:28784606..28787686,3	K562	blood:
2	chr18:28773850..28776194-chr18:28777418..28780175,2	MCF-7	breast:
3	chr18:28767376..28769243-chr18:28777763..28779276,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1365296	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1469300	0.96[EUR][1000 genomes]
rs1469301	0.96[EUR][1000 genomes]
rs1469302	0.97[EUR][1000 genomes]
rs1469304	0.96[EUR][1000 genomes]
rs1469945	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1898491	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs2011596	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2162275	0.91[EUR][1000 genomes]
rs2919996	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2919998	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2919999	0.96[EUR][1000 genomes]
rs6506895	0.91[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs6506896	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28771000-28789000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr18:28771200-28778800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:28771400-28783000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr18:28773400-28779000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr18:28773600-28778800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr18:28773600-28779400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr18:28775800-28783000	Weak transcription	K562	blood
8	chr18:28777000-28780000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr18:28777200-28778200	Enhancers	Fetal Intestine Large	intestine
10	chr18:28777200-28778400	Weak transcription	HepG2	liver
11	chr18:28777200-28779000	Enhancers	NHEK	skin
12	chr18:28777200-28779400	Enhancers	Duodenum Mucosa	Duodenum
13	chr18:28777200-28780000	Enhancers	Fetal Intestine Small	intestine
14	chr18:28777200-28780000	Enhancers	HMEC	breast
15	chr18:28777400-28779000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr18:28777600-28778200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr18:28777600-28778600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr18:28777600-28780000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr18:28777600-28780000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr18:28777800-28778200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr18:28777800-28779000	Weak transcription	Stomach Mucosa	stomach
22	chr18:28778000-28778800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr18:28778000-28779000	Weak transcription	Hela-S3	cervix
24	chr18:28778000-28779200	Weak transcription	NH-A	brain
25	chr18:28778000-28779400	Weak transcription	A549	lung
26	chr18:28778000-28783200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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