Variant report

Variant	rs6506895
Chromosome Location	chr18:28771843-28771844
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1365296	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1469300	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469301	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469302	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469304	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469945	1.00[CEU][hapmap];0.80[CHD][hapmap];0.87[GIH][hapmap];0.84[EUR][1000 genomes]
rs2011596	0.97[EUR][1000 genomes]
rs2162275	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2912328	0.91[EUR][1000 genomes]
rs2919996	1.00[CEU][hapmap];0.80[CHD][hapmap];0.82[GIH][hapmap];0.80[MKK][hapmap];0.83[EUR][1000 genomes]
rs2919998	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2919999	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6506896	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3317366	chr18:28771236-28776023	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3317367	chr18:28771244-28776059	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3317368	chr18:28771329-28775927	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv20999	chr18:28771340-28775873	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28769200-28773200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr18:28770400-28773400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr18:28770600-28772600	Enhancers	HMEC	breast
4	chr18:28770600-28773200	Enhancers	NHEK	skin
5	chr18:28770800-28773600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr18:28771000-28789000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr18:28771200-28772800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr18:28771200-28778800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr18:28771400-28772400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr18:28771400-28772800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr18:28771400-28773000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr18:28771400-28783000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr18:28771600-28772000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr18:28771800-28772800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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