Variant report

Variant	rs1471584
Chromosome Location	chr15:40407191-40407192
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40330799..40332833-chr15:40406377..40408340,2	MCF-7	breast:
2	chr15:40400901..40404244-chr15:40406396..40409673,3	K562	blood:

Variant related genes	Relation type
ENSG00000140319	Chromatin interaction
ENSG00000248508	Chromatin interaction
ENSG00000104081	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11630670	0.95[ASN][1000 genomes]
rs12909145	0.98[ASN][1000 genomes]
rs34079741	0.98[ASN][1000 genomes]
rs34231574	0.85[ASN][1000 genomes]
rs34245505	0.83[ASN][1000 genomes]
rs35477346	0.92[ASN][1000 genomes]
rs35603048	0.81[ASN][1000 genomes]
rs537455	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs539846	0.87[ASN][1000 genomes]
rs580781	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8024033	0.95[ASN][1000 genomes]
rs8031450	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8033229	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9635304	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40401800-40407200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:40401800-40408000	Weak transcription	Spleen	Spleen
3	chr15:40402000-40407400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:40402000-40407800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr15:40402000-40407800	Weak transcription	HMEC	breast
6	chr15:40402000-40408200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:40402000-40418600	Weak transcription	Right Atrium	heart
8	chr15:40402200-40407200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:40402200-40407600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:40402600-40407600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:40403800-40407800	Enhancers	GM12878-XiMat	blood
12	chr15:40404600-40407800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:40404800-40407800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:40405000-40407600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr15:40405000-40407600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr15:40405200-40407800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:40405400-40407600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:40405400-40407800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:40405400-40407800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:40405400-40407800	Weak transcription	HepG2	liver
21	chr15:40405400-40408800	Enhancers	Primary B cells from peripheral blood	blood
22	chr15:40405600-40407800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:40405600-40407800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:40406000-40408600	Enhancers	Primary B cells from cord blood	blood
25	chr15:40406000-40409600	Enhancers	Fetal Thymus	thymus
26	chr15:40406200-40407600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr15:40406400-40407800	Enhancers	Dnd41	blood
28	chr15:40406400-40407800	Weak transcription	Hela-S3	cervix

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