Variant report

Variant	rs35603048
Chromosome Location	chr15:40391965-40391966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40342956..40345791-chr15:40389827..40392011,2	MCF-7	breast:
2	chr15:40361459..40366979-chr15:40389781..40395512,5	MCF-7	breast:
3	chr15:40389103..40392679-chr15:40452401..40455332,4	K562	blood:
4	chr15:40338671..40341082-chr15:40391017..40392708,2	MCF-7	breast:
5	chr15:40345188..40347486-chr15:40391657..40395509,4	MCF-7	breast:
6	chr15:40328740..40331785-chr15:40389787..40392261,3	K562	blood:
7	chr15:40336205..40337868-chr15:40391134..40392725,2	K562	blood:
8	chr15:40357794..40362220-chr15:40389488..40392528,3	MCF-7	breast:
9	chr15:40372039..40375867-chr15:40386826..40392262,4	K562	blood:
10	chr15:40345820..40349466-chr15:40390060..40393212,4	MCF-7	breast:
11	chr15:40388598..40390113-chr15:40390447..40392056,2	K562	blood:
12	chr15:40361484..40363622-chr15:40390334..40391984,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000156970	Chromatin interaction
ENSG00000140319	Chromatin interaction
ENSG00000248508	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11630670	0.81[ASN][1000 genomes]
rs11634257	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11637595	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11637681	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12909145	0.83[ASN][1000 genomes]
rs1471584	0.81[ASN][1000 genomes]
rs34079741	0.83[ASN][1000 genomes]
rs34231574	0.93[ASN][1000 genomes]
rs34245505	0.83[ASN][1000 genomes]
rs35477346	0.88[ASN][1000 genomes]
rs8024033	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40383400-40394000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr15:40384200-40392400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:40387200-40392800	Enhancers	Fetal Intestine Large	intestine
4	chr15:40387200-40395600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:40387200-40397800	Enhancers	Fetal Muscle Leg	muscle
6	chr15:40387400-40395200	Enhancers	NHLF	lung
7	chr15:40387600-40395200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:40387600-40397200	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr15:40388000-40393800	Enhancers	Fetal Kidney	kidney
10	chr15:40388400-40392400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:40388600-40393000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr15:40388600-40393400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr15:40389000-40394400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr15:40389200-40392400	Enhancers	Lung	lung
15	chr15:40389200-40400000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:40389600-40392400	Enhancers	Fetal Muscle Trunk	muscle
17	chr15:40389600-40393800	Enhancers	HUVEC	blood vessel
18	chr15:40389800-40393600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr15:40389800-40394000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:40389800-40394200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr15:40389800-40400400	Enhancers	Small Intestine	intestine
22	chr15:40390000-40392600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:40390000-40392600	Enhancers	Dnd41	blood
24	chr15:40390000-40393400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr15:40390200-40392400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:40390200-40392400	Enhancers	Fetal Stomach	stomach
27	chr15:40390200-40394200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr15:40390400-40399800	Transcr. at gene 5' and 3'	Thymus	Thymus
29	chr15:40390800-40392200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:40390800-40392400	Weak transcription	Ovary	ovary
31	chr15:40390800-40392400	Enhancers	HSMMtube	muscle
32	chr15:40390800-40394000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr15:40390800-40394200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr15:40391000-40392200	Enhancers	Fetal Lung	lung
35	chr15:40391000-40392400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr15:40391000-40392600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:40391000-40393400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:40391000-40393800	Weak transcription	HMEC	breast
39	chr15:40391000-40394600	Weak transcription	Fetal Brain Male	brain
40	chr15:40391000-40395000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:40391000-40395000	Enhancers	Adipose Nuclei	Adipose
42	chr15:40391000-40399800	Enhancers	Liver	Liver
43	chr15:40391200-40392400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr15:40391200-40392400	Flanking Active TSS	GM12878-XiMat	blood
45	chr15:40391200-40395200	Enhancers	Duodenum Mucosa	Duodenum
46	chr15:40391200-40398800	Enhancers	Placenta	Placenta
47	chr15:40391400-40392200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:40391400-40392400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr15:40391400-40392400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr15:40391400-40392400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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