Variant report

Variant	rs34231574
Chromosome Location	chr15:40396001-40396002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40376791..40380091-chr15:40393802..40397569,3	MCF-7	breast:
2	chr15:40343717..40348357-chr15:40394391..40397717,7	MCF-7	breast:
3	chr15:40328572..40331875-chr15:40394053..40397065,4	MCF-7	breast:
4	chr15:40395137..40397237-chr15:40456006..40457830,2	K562	blood:
5	chr15:40329348..40332922-chr15:40394377..40398986,5	MCF-7	breast:
6	chr15:40395905..40397944-chr15:40452916..40455241,3	MCF-7	breast:
7	chr15:40394940..40397179-chr15:40397500..40400223,3	K562	blood:

Variant related genes	Relation type
ENSG00000156970	Chromatin interaction
ENSG00000248508	Chromatin interaction
ENSG00000104081	Chromatin interaction
ENSG00000140319	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11630670	0.81[ASN][1000 genomes]
rs11634257	0.92[ASN][1000 genomes]
rs11637595	0.92[ASN][1000 genomes]
rs11637681	0.92[ASN][1000 genomes]
rs12909145	0.83[ASN][1000 genomes]
rs1471584	0.85[ASN][1000 genomes]
rs34079741	0.83[ASN][1000 genomes]
rs34245505	0.82[ASN][1000 genomes]
rs35477346	0.88[ASN][1000 genomes]
rs35603048	0.93[ASN][1000 genomes]
rs539846	0.83[ASN][1000 genomes]
rs8024033	0.90[ASN][1000 genomes]
rs8033229	0.83[ASN][1000 genomes]
rs9635304	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40387200-40397800	Enhancers	Fetal Muscle Leg	muscle
2	chr15:40387600-40397200	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr15:40389200-40400000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:40389800-40400400	Enhancers	Small Intestine	intestine
5	chr15:40390400-40399800	Transcr. at gene 5' and 3'	Thymus	Thymus
6	chr15:40391000-40399800	Enhancers	Liver	Liver
7	chr15:40391200-40398800	Enhancers	Placenta	Placenta
8	chr15:40391400-40396600	Genic enhancers	Fetal Thymus	thymus
9	chr15:40391400-40396800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr15:40391400-40397600	Enhancers	NH-A	brain
11	chr15:40391400-40400000	Enhancers	Stomach Mucosa	stomach
12	chr15:40392000-40400000	Enhancers	Right Atrium	heart
13	chr15:40392000-40400000	Enhancers	Right Ventricle	heart
14	chr15:40392000-40400400	Enhancers	Pancreas	Pancrea
15	chr15:40392200-40400200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr15:40392400-40397200	Genic enhancers	Primary B cells from peripheral blood	blood
17	chr15:40392400-40397600	Enhancers	Psoas Muscle	Psoas
18	chr15:40392400-40398400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:40392600-40396600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:40392600-40398600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:40392800-40397800	Enhancers	Lung	lung
22	chr15:40393400-40396800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr15:40393600-40396400	Weak transcription	A549	lung
24	chr15:40393600-40396800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:40393800-40399200	Enhancers	Ovary	ovary
26	chr15:40393800-40400200	Enhancers	Esophagus	oesophagus
27	chr15:40394000-40396600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr15:40394000-40396800	Weak transcription	Dnd41	blood
29	chr15:40394000-40397600	Enhancers	Brain Angular Gyrus	brain
30	chr15:40394000-40400200	Enhancers	Left Ventricle	heart
31	chr15:40394200-40396400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr15:40394200-40396400	Weak transcription	HepG2	liver
33	chr15:40394200-40396600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:40394200-40396600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr15:40394200-40396600	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr15:40394200-40396600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr15:40394200-40396800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr15:40394200-40396800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:40394200-40396800	Genic enhancers	Spleen	Spleen
40	chr15:40394200-40397200	Genic enhancers	Primary monocytes fromperipheralblood	blood
41	chr15:40394200-40397400	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr15:40394200-40398400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:40394200-40398800	Enhancers	Gastric	stomach
44	chr15:40394200-40400000	Enhancers	Fetal Intestine Large	intestine
45	chr15:40394200-40400000	Enhancers	Fetal Muscle Trunk	muscle
46	chr15:40394400-40396400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr15:40394400-40396800	Weak transcription	Primary T cells from cord blood	blood
48	chr15:40394400-40399400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr15:40394600-40397600	Enhancers	Aorta	Aorta
50	chr15:40394600-40398000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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