Variant report

Variant	rs1474605
Chromosome Location	chr6:15658212-15658213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15652481..15654857-chr6:15657741..15659899,3	K562	blood:
2	chr6:15655170..15659272-chr6:15659508..15662983,5	MCF-7	breast:
3	chr6:15628579..15630551-chr6:15656798..15659188,2	K562	blood:
4	chr6:15657500..15659223-chr6:15666722..15668599,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11752196	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11755055	0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2005976	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2252470	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2619521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2619522	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2619524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2619525	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2619528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2619545	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2619546	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2619547	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2619549	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2619550	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2743550	0.82[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap]
rs2743854	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2743856	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2743857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2743861	0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs2743862	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2743863	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2743865	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2743866	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2743867	0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs2743869	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs6914388	0.82[MEX][hapmap]
rs734129	0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs760761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs875463	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs9296984	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs9296985	0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs9464803	1.00[JPT][hapmap]
rs9464805	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9476837	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs9476838	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs9476844	1.00[JPT][hapmap]
rs9476845	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9476858	0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs9476859	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs9476863	1.00[JPT][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3414662	chr6:15655007-15660306	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15600000-15660400	Weak transcription	Hela-S3	cervix
2	chr6:15615200-15662200	Weak transcription	Gastric	stomach
3	chr6:15616800-15662000	Weak transcription	Placenta	Placenta
4	chr6:15616800-15662200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:15621800-15662200	Weak transcription	Pancreas	Pancrea
6	chr6:15623800-15662000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:15628600-15662000	Weak transcription	NHLF	lung
8	chr6:15629600-15661800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:15632200-15662000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:15637200-15662000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:15638200-15662000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:15639400-15662200	Weak transcription	Left Ventricle	heart
13	chr6:15642000-15662000	Weak transcription	Brain Angular Gyrus	brain
14	chr6:15642200-15662200	Weak transcription	Aorta	Aorta
15	chr6:15642400-15661400	Weak transcription	Spleen	Spleen
16	chr6:15642600-15662200	Weak transcription	Esophagus	oesophagus
17	chr6:15642800-15662000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:15642800-15662000	Weak transcription	Lung	lung
19	chr6:15642800-15662000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:15643000-15658600	Weak transcription	Fetal Thymus	thymus
21	chr6:15643000-15662000	Weak transcription	Fetal Stomach	stomach
22	chr6:15644400-15658600	Weak transcription	Psoas Muscle	Psoas
23	chr6:15644400-15661800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:15644400-15662000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:15644800-15658600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr6:15644800-15661800	Weak transcription	HepG2	liver
27	chr6:15644800-15662000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:15644800-15662000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:15645600-15661800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr6:15646000-15662000	Weak transcription	NHDF-Ad	bronchial
31	chr6:15646200-15662000	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:15647200-15658800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:15647800-15662000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:15648200-15662200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:15648600-15661000	Weak transcription	Fetal Intestine Large	intestine
36	chr6:15648600-15662000	Weak transcription	Fetal Lung	lung
37	chr6:15648800-15662000	Weak transcription	Fetal Brain Female	brain
38	chr6:15649000-15658800	Weak transcription	Thymus	Thymus
39	chr6:15649400-15658400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr6:15649400-15662000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:15649600-15662000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:15649800-15658800	Weak transcription	Primary hematopoietic stem cells	blood
43	chr6:15649800-15662000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:15649800-15662000	Weak transcription	Liver	Liver
45	chr6:15649800-15662000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr6:15649800-15662200	Weak transcription	HSMM	muscle
47	chr6:15650000-15658600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:15650400-15661800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:15650800-15662000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr6:15651000-15658600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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