Variant report

Variant	rs2619545
Chromosome Location	chr6:15632741-15632742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15631159..15634142-chr6:15637366..15640748,3	K562	blood:
2	chr6:15624573..15630362-chr6:15631588..15637195,8	K562	blood:
3	chr6:15631602..15633808-chr6:16128378..16130825,3	K562	blood:
4	chr6:15631736..15634432-chr6:15661180..15663811,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction
ENSG00000047579	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1018381	0.81[ASN][1000 genomes]
rs1018382	0.81[ASN][1000 genomes]
rs11752196	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11755055	0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs11757499	0.81[ASN][1000 genomes]
rs11759609	0.81[ASN][1000 genomes]
rs1474605	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16876671	0.81[ASN][1000 genomes]
rs1997679	0.81[ASN][1000 genomes]
rs2005976	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2252470	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2619516	0.81[ASN][1000 genomes]
rs2619519	0.81[ASN][1000 genomes]
rs2619521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2619522	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2619524	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2619525	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2619526	0.81[ASN][1000 genomes]
rs2619528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2619529	0.81[ASN][1000 genomes]
rs2619535	0.81[ASN][1000 genomes]
rs2619540	0.81[ASN][1000 genomes]
rs2619541	0.81[ASN][1000 genomes]
rs2619544	0.81[ASN][1000 genomes]
rs2619546	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2619547	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619548	0.81[ASN][1000 genomes]
rs2619549	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2619550	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2619552	0.81[ASN][1000 genomes]
rs2743548	0.81[ASN][1000 genomes]
rs2743549	0.81[ASN][1000 genomes]
rs2743550	0.82[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs2743853	0.81[ASN][1000 genomes]
rs2743854	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs2743856	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2743857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2743858	0.81[ASN][1000 genomes]
rs2743859	0.81[ASN][1000 genomes]
rs2743860	0.81[ASN][1000 genomes]
rs2743861	0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2743862	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2743863	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2743864	0.81[ASN][1000 genomes]
rs2743865	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs2743866	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs2743867	0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs2743869	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs2743870	0.81[ASN][1000 genomes]
rs2743871	0.81[ASN][1000 genomes]
rs2743872	0.81[ASN][1000 genomes]
rs6459408	0.81[ASN][1000 genomes]
rs6903159	0.81[ASN][1000 genomes]
rs6914388	0.82[MEX][hapmap]
rs734129	0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs760761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7752070	0.81[ASN][1000 genomes]
rs7770921	0.81[ASN][1000 genomes]
rs875463	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs9296984	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs9296985	0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs9296987	0.81[ASN][1000 genomes]
rs9296988	0.81[ASN][1000 genomes]
rs9464801	0.81[ASN][1000 genomes]
rs9464802	0.81[ASN][1000 genomes]
rs9464803	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9464805	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9464807	0.81[ASN][1000 genomes]
rs9476837	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs9476838	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs9476844	1.00[JPT][hapmap]
rs9476845	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9476854	0.81[ASN][1000 genomes]
rs9476858	0.82[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs9476859	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs9476860	0.81[ASN][1000 genomes]
rs9476863	1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[ASN][1000 genomes]
rs9476865	0.81[ASN][1000 genomes]
rs9476866	0.81[ASN][1000 genomes]
rs9476867	0.81[ASN][1000 genomes]
rs9476868	0.81[ASN][1000 genomes]
rs9476869	0.81[ASN][1000 genomes]
rs9476883	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15597000-15641600	Weak transcription	Spleen	Spleen
2	chr6:15600000-15660400	Weak transcription	Hela-S3	cervix
3	chr6:15610600-15640200	Weak transcription	Aorta	Aorta
4	chr6:15611800-15641800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:15614800-15641600	Weak transcription	Lung	lung
6	chr6:15615000-15652600	Weak transcription	Colonic Mucosa	Colon
7	chr6:15615200-15641000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:15615200-15642200	Weak transcription	Thymus	Thymus
9	chr6:15615200-15662200	Weak transcription	Gastric	stomach
10	chr6:15615400-15643000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:15615600-15639000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:15616800-15638600	Weak transcription	Psoas Muscle	Psoas
13	chr6:15616800-15662000	Weak transcription	Placenta	Placenta
14	chr6:15616800-15662200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:15621800-15662200	Weak transcription	Pancreas	Pancrea
16	chr6:15622200-15637800	Weak transcription	Small Intestine	intestine
17	chr6:15622200-15638800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:15622200-15641000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:15622200-15641600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:15622200-15641800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:15622200-15643600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:15622200-15649200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:15623600-15641000	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:15623600-15643200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:15623800-15638800	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:15623800-15639000	Weak transcription	Left Ventricle	heart
27	chr6:15623800-15662000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:15624400-15641600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:15624400-15642000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:15626400-15639000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:15626400-15641000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:15626600-15637200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:15627200-15633600	Weak transcription	Primary B cells from cord blood	blood
34	chr6:15627400-15636000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:15627800-15633400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr6:15627800-15636000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr6:15627800-15636000	Weak transcription	Primary B cells from peripheral blood	blood
38	chr6:15627800-15636000	Weak transcription	Fetal Thymus	thymus
39	chr6:15627800-15637400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr6:15628600-15662000	Weak transcription	NHLF	lung
41	chr6:15629400-15634800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:15629400-15635600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:15629400-15635800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr6:15629400-15636400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr6:15629400-15637000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:15629400-15640400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:15629400-15641600	Weak transcription	Fetal Stomach	stomach
48	chr6:15629400-15641800	Weak transcription	HMEC	breast
49	chr6:15629400-15641800	Weak transcription	NHEK	skin
50	chr6:15629400-15642200	Weak transcription	NHDF-Ad	bronchial

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